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Easily Integrate Checkrun with QuickBooks Online

A two-way sync with QuickBooks Online simplifies payment approvals and workflows, while eliminating manual data entry errors and inefficiencies.

The Product

Great alone. Better together.

By connecting Checkrun and QuickBooks Online, you’ll be able to fully automate your payment workflows and approvals and spend less time in your accounting software.

Two-way sync and reconciliation

Checkrun syncs everything from QuickBooks Online, bills, invoices, supporting attachments, etc. We also sync all payment records, check images and audit trails in Checkrun to your QuickBooks Online account in real-time.


Better visibility and control

Easily manage multiple accounts with a single log-in. Automate approvals and workflows with custom role-based permissions and easily route payments approvals to the right person, while maintaining control of your cash flow.

Anytime, Anywhere Payments

Review, approve, sign and send payments anytime, on any device. Automated approval workflows and mobile access give you a real-time view of your cash flow, even on the go.

How it works.

A two-way sync with Checkrun and QuickBooks Online improves the speed, efficiency, mobility and security of the entire payment approval process.



Enter Bills

Enter your bills the way you always do it in QuickBooks Online. Select “Mark as Paid” to automatically import to Checkrun.


Customize Account

In Checkrun, create and customize your approval workflows, user roles and permissions.


Approve, Pay, Print

Review, approve, sign and send payments through Checkrun. All payments are drawn directly from your bank account; no prefunding required.


Sync and Reconcile

Once payments are approved in Checkrun, the check image is sent back into your QuickBooks Online account for added security and audit trails.

Business needs

Why choose Checkrun?

Our check-focused payment platform makes it simple to manage your business payments, eliminate obstacles of current bookkeeping processes, and take your business remote.

Stay on top of your workflow with built-in notifications and reminders

Customize your approval workflows and user roles to fit your business needs

Manage multiple accounts with a single log-in

Simple, reliable, secure.

Give check payments their due.

From our convenient mobile app that lets you approve, sign, and send checks from your phone, to the advanced security features that keep your business protected, and much more, Checkrun is fully integrated with QuickBooks Online and is designed to work for your specific business needs.


No pre-funding required

Checkrun processes and prints checks directly from the businesses own checking accounts. NO NEED to approve and FUND payments 4-7 days prior to payments being created.


Approve and pay from anywhere

We offer the ability to take your AP process remote with mobile check approvals and signing. Review, approve, and schedule your payments at anytime, from anywhere.


Guard against check fraud with Positive Pay

Add cutting edge fraud protection while reducing costs. Our Positive Pay software helps protect your business against fraudulent activity and reduce the risk of unnecessary losses.


Print smarter, safer checks instantly

Whether it’s QuickBooks preprints or blank check stock, we deliver the safest and most secure check. Checkrun accommodates multiple print layouts, colors, and logos so you can customize your checks to suit your needs.

5 stars
Martin G.

“Checkrun is great in bridging the gap between customer payments. It took a lot of stress out of running a small business. I am able to review invoices and attachments right from my quickbooks online account on my tablet. I can also view attached copies of the printed checks in both Checkrun and quickbooks.”


Get Started with Checkrun Free Today!

Let’s Talk.

Have a question about Checkrun or want to learn more about our plan options? We can help. Chat with us now, complete the form, or give us a call.

1-833-CHCK-RUN (1-833-242-5786)

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