Bill Pay & ACH Payments Coming Soon!

Everything your business needs to simplify your bill pay.

Easily pay your vendors the way you want – by ACH or check – and streamline the entire payment process, from payment approval to disbursement.

Pay vendors easily online with Checkrun

Integrates seamlessly with QuickBooks Online

Manage AP approvals with the Checkrun app


Built-in security and fraud protection

Manage multiple accounts with a single sign-on

One platform. 
Secure payments. 
Effortless solutions. 

When check payments are business as usual, Checkrun is the most secure, convenient, and cost-effective way to sign and cut check payments.

Tasks like getting payments approved and signed, toggling between programs and accounts, or spending hours preparing audit reports shouldn’t hold your team back on work that really matters. We’ve built a powerful, easy and secure solution that helps businesses like you, start, grow and scale your back office.


Designed for businesses, bookkeepers and accountants


Seamless 2-way sync with QuickBooks Online


Quick and easy setup, no software installation or heavy lifting


One platform and mobile app with multiple features


Manage check payments and check printing from one place


Bank-level security and Positive Pay services

How Checkrun works.

Our all-in-one bill pay platform helps you pay your vendors, simplify accounts payable, detect and prevent fraud with powerful tools like positive pay — and more.


Sync Checkrun to QuickBooks Online, in real time, so you can streamline your bookkeeping workflow.



Automate everything from approvals to printing checks with Checkrun’s all-in-one bill pay platform and mobile app.


Expand the way you pay vendors with Checkrun. Pay business bills via check or ACH from multiple accounts — all in one place.


Payment Flexibility – If paying by check, easily print professional business checks locally or use Checkrun’s print and mail service or electronic payments for added convenience.

Speed. Security. Scalability. This is bill pay made easy.

Take control of your back office with time-saving automation, online check printing, and remote access. Improve cash flow, pay bills faster, and get more done — all with Checkrun.

Vendors, bills, payments and more, all in one place.

Checkrun provides a powerful bill pay platform for managing business expenses in one secure place. Gain internal processing efficiencies, pay bills faster and reduce trips to your bank.

remote accounts payable

Payment approval workflows keep you in total control.

Easily set up user roles to route and customize approvals to the right team member at the right time. See all payment activity at a glance through the Checkrun dashboard.

Truprint high security blank check stock

Pay vendors how they want.

Pay every business expense online. Choose to make payment by ACH bank transfer, or by paper check. Your vendor doesn’t need to sign up in order to receive secure payments and ensure remittance.

manage approvals anywhere

Simplify how you print and mail paper checks.

Easily print and mail secure business checks from your home or office. Checkrun’s printing solutions works with Intuit Preprinted checks and blank stock too. Choose from multiple check layouts for the right check for your business. Or, we can print and mail them on your behalf – the same-day.

Checkrun check printing software

Automate payables in minutes, from anywhere.

Eliminate the tedious paperwork and chasing ink-on-paper signatures and approvals. Enjoy the freedom of remote accounts payable management – approve and sign checks anytime, anywhere, from any device.

quickbooks online integration

QuickBooks Online integration that makes your life easier.

Checkrun seamlessly integrates with your QuickBooks Online account, powering it up with real-time, two-way sync to help you simplify bill pay and manage your bookkeeping workflow.

Checkrun and QuickBooks Online integration

Enjoy powerful features that support your back office.

You have more important things to focus on. Let Checkrun take the stress of managing business bills off your shoulders. Streamline the entire payment process, from payment approval to disbursement.

Bill Pay portal

 Powerful payment capabilities with easy-to-use dashboard designed to cut bill pay by costs 50%.

Approval workflows

Set up automated approval workflows and custom user roles to fit with your business needs.

Payment flexibility

Easily pay vendors by ACH or check with Checkrun. Your vendor doesn’t need to sign up to receive fast, secure payments.

Remittance data

All payment-related activity is automatically logged and attached to each payment for easy reference and to ensure remittance.

Check printing

Print checks at home or office – pre-prints and blank check stock supported. All you need is Checkrun and a printer.

Print and Mail Service

Automate the mailing of checks to vendors by letting Checkrun print, stamp, and mail them for you.


Easily set up notifications (via email or phone) by user role to ensure you never miss a payment and stay on top of each payment status.

Vendor management

Manage vendors with ease, deciding how you pay and keeping and eye on payment-related reporting for each vendor.

Better business bill pay starts here.

Use Checkrun to manage and pay vendors by ACH or paper checks
— from one, secure platform. You choose.

Pay vendors by check

Handle check payments seamlessly – without the hassle of manual processes. Carry out your payments with ease and speed. Process your payments faster and get the flexibility to make check payments from anywhere.

Pay vendors by ACH

Easily send business payments and echecks, online. Checkrun provides the simplest way to set up your account vailidation process for ACH. Manage & track all your outgoing payments and bills in one place.

Trust is important to us!

"This software was the critical tool that allowed me to make check payments when geographically separated from the company's bookkeeper. This tool provided all the necessary resources to effectively manage this part of the business."

Clinton R.

Real Estate Management

"We all work remotely and Checkrun has a mobile app so we can approve and sign payments right from the app. The signature shows up on the check and the app keeps track of all workflow steps so we never miss a payment. They also have a print and mail service or you can print checks out yourself. It is a nice app that works for us."

Kimberly G.

Education Management

“I’m a bookkeeper and I manage several clients. Checkrun has been a huge timesaver for me. My clients can approve and sign payments remotely from their phones without me visiting their remote locations. Setup was fast and easy."

Bill F.

Freelance Bookkeeper


A Plan For Every Business

Designed to fit the needs of your business, at prices that won’t break the bank.

Annual Plan


Ideal for businesses looking to minimize time while maximizing cash flow. Pay upfront and save 15% annually.

Flex: Print and Mail Plan


Includes access to Checkrun’s Print and Mail Service, plus additional Checkrun features at an affordbale price.

Monthly Plan


Perfect for small businesses with a growing number of finance tasks and bills. 

Ready to get started?

Start your 15 day risk-free trial today.

ACH and direct bill pay coming to Checkrun

Sign up to join the waitlist

Sign up to be the first to know when these payment capabilities drop! Or, click here to learn more about ACH and Bill Pay. If you're interested in joining our beta program, click here

Thank you for joining the Checkrun ACH and Bill Pay beta waitlist. We'll send you an invite to get started soon!