Modernizing Check Payments with QuickBooks Online

When check payments are business as usual, Checkrun is the most secure, convenient, and cost-effective way to pay.

Checkrun; Check; Payments; Quickbooks; Online

Integrates seamlessly with QuickBooks® Online

Sign checks remotely with the Checkrun Mobile Approval App

Built-in fraud and tamper protection

Manage multiple accounts with a single login

Watch How Checkrun Can improve Your Payment Processes!

Respect The Check.

Upgrade your check payments with Checkrun, the mobile and cloud-based application for QuickBooks® Online users that provides businesses a secure, anytime-anywhere payment workflow for the most modern way to cut checks.

The Checkrun Advantage

Why Choose Checkrun?

Take control of your back office with time-saving automation, online check printing, and remote access. Gain internal processing efficiencies, pay bills faster and reduce trips to your bank.

Improve productivity

Increase efficiency and save time when you automate payments—from automatic sync with QuickBooks Online to auto-remittance advice.

Simplify payment approvals

Use custom rules to automate, route, and customize approvals to the right team member at the right time. Approve and pay bills faster, with fewer resources.

Pay from anywhere, securely

The Checkrun Mobile Approval App gives the freedom to manage, approve, sign and pay all of your business bills from anywhere, at any time. 

Checkrun is the most modern way for businesses to pay by check in QuickBooks Online

Simple, easy to use platform and mobile approval app
2-way, real-time sync with QuickBooks Online
Automate and streamline manual and complex workflows
No pre-funding required

To learn more about Checkrun’s integration with QuickBooks Online, visit our step-by-step guide here.

Speed. Security. Scalability. This is bill pay made easy.

Improve cash flow, pay bills faster, and get more done — all with Checkrun.

Check Payment solution

Simplify check payments with a cloud-based system

Tasks like getting payments approved and signed, toggling between programs and accounts, or spending hours preparing audit reports shouldn’t hold your team back. We’ve built a powerful, easy and secure solution that helps businesses like you, start, grow and scale your back office.

Manage check payments and printing in one place

Add multi-layered security and digitally-driven convenience to check payments in minutes through our cloud-based or mobile solutions. No software installation, no technical expertise required, no heavy lifting.

Single login to access all of your client accounts

Checkrun supports quickly toggling between all of your clients Checkrun memberships with a single login.

Eliminate the need to securely store costly preprinted check stock

Checkrun supports printing on your current QuickBooks preprinted checks or blank check stock. When using blank check stock all client specific data is printed along with the check, and the same check stock can be used for all of your clients.

Guard against fraud with Positive Pay

Checkrun is the only check management application to integrate services for Positive Pay—a powerful fraud prevention system offered by the nation’s leading commercial banks.

Approval Workflows

Gain greater control with automated approvals – anywhere

Easily set up user roles to route and customize approvals to the right team member at the right time. See all payment activity at a glance through the Checkrun dashboard or Mobile App.

Approve checks anywhere with the Checkrun Mobile Approval App

The Checkrun Mobile Approval App makes it possible to approve and sign checks with a digital wet-signature anytime, anywhere from your mobile device. No more tracking down approvers and no more rushing back to the office to sign and cut checks.

Stay on top of your workflow with auto-notifications

Checkrun email and push notifications instantly let you know when your review, authorization or signature is needed.

Customize workflows and user permissions

Checkrun’s custom workflows and role management capabilities help tighten your internal controls. Mitigate additional risk by eliminating the need for excess signers, signature stamps or signed blank checks with the Checkrun Mobile Approval App.

Run audit reports that are already built-in

QuickBooks Online allows you to upload supporting attachments for payments. These attachments are commonly bills and invoices and are pulled directly into your Checkrun payment. Approvers can review support materials within the Checkrun app without a need to print out physical documents.

Flexible payments

Expand the way you pay with flexible payment options

Pay every business expense online. Choose to make payment by ACH bank transfer, or by paper check. Your vendor doesn’t need to sign up in order to receive secure payments and ensure remittance.

Print a more secure check

Checkrun adds unprecedented security to your printed check. Protect against tampering with customization options such as logos, watermarks, and a secure QR that includes payment information allowing payees to validate your check’s authenticity.

Print checks locally from your office or home

Whether it’s QuickBooks® pre-prints or blank check stock, Checkrun accommodates multiple print layouts, colors, and logos so you can customize your checks to suit your needs.

Skip self-printing altogether with Print and Mail

Approve and sign checks through the Mobile Approval App, choose the Print + Mail option, and we’ll take care of the rest for just $1.75/check.

Pay electronically by ACH

Pay your vendors online, straight to their bank account, and reduce trips to the bank. ACH payments process faster than checks so you can hold onto your cash longer. Plus, easily send your vendors the remittance advice needed to reconcile their payments.

Better business bill pay starts here.

Use Checkrun to manage and pay vendors by ACH or paper checks
— from one, secure platform. You choose.

Pay vendors by check

Handle check payments seamlessly – without the hassle of manual processes. Carry out your payments with ease and speed. Process your payments faster and get the flexibility to make check payments from anywhere.

Pay vendors by ACH

Easily send business payments and echecks, online. Checkrun provides the simplest way to set up your account vailidation process for ACH. Manage & track all your outgoing payments and bills in one place.


A Plan For Every Business

Designed to fit the needs of your business, at prices that won’t break the bank.

Annual Plan


Ideal for businesses looking to minimize time while maximizing cash flow. Pay upfront and save 25% annually.

Monthly Plan


Perfect for small businesses with a growing number of finance tasks and bills. 

Manage every payment on-the-go

Eliminate the tedious paperwork and chasing ink-on-paper signatures and approvals. Enjoy the freedom of remote accounts payable management – approve and sign checks anytime, anywhere, from any device.

Checkrun Mobile App

Don’t just take it from us. 

“This software was the critical tool that allowed me to make check payments when geographically separated from the company’s bookkeeper. This tool provided all the necessary resources to effectively manage this part of the business.”

Clinton R. 

Real Estate Management

“We all work remotely and Checkrun has a mobile app so we can approve and sign payments right from the app. The signature shows up on the check and the app keeps track of all workflow steps so we never miss a payment. They also have a print and mail service or you can print checks out yourself. It is a nice app that works for us.”

Kimberly G. 

Senior Team Executive

“I’m a bookkeeper and I manage several clients. Checkrun has been a huge timesaver for me. My clients can approve and sign payments remotely from their phones without me visiting their remote locations. Setup was fast and easy.”

Bill F. 

Freelance Bookkeeper

Get In Touch or Book a Demo

Ready to Get Started?

Join the hundreds of businesses choosing Checkrun to simplify accounts payable and business bill pay.